bimm143_github

My classwork from BIMM 143 at BIMM143 UC San Diego

Index of Material

Introductory classes

Class 01 Welcome to Bioinformatics

Class 02 Sequence alignment fundamentals, algorithms and applications

Class 03 Advanced sequence alignment and database searching

Class 04 Bioinformatic data analysis with R

Class 05 Data viz with ggplot

Class 06 Why, when and how of writing your own R functions

Class 07 Introduction to machine learning for Bioinformatics 1

Class 08 Unsupervised learning mini project

Class 09 Candy mini project

Class 10 Structural Bioinformatics (pt1)

Class 11 Structural Bioinformatics (pt2 AlphaFold)

Class 12 Genome informatics and high throughput sequencing

Class 13 Transcriptomics, RNA-Seq analysis, and the interpretation of gene lists

Class 14 RNA-Seq mini project

Class 16 Essential UNIX for bioinformatics

Class 17 Analyzing sequencing data in the cloud

Class 18 pertussis resurgence mini-project

Class 19 Cancer mutation analysis mini-project

Long Term Project

Find a Gene Project